DockerCWLDockerTranslator
The Docker CWLDockerTranslator instantiates a DockerConnector instance with the given configuration for every CWL DockerRequirement specification in the selected subworkflow.
properties |
||
addHost |
Add a custom host-to-IP mapping (host:ip) |
|
type |
string[] |
|
blkioWeight |
Block IO (relative weight), between 10 and 1000, or 0 to disable |
|
type |
integer |
|
default |
0 |
|
blkioWeightDevice |
Block IO weight (relative device weight) |
|
type |
integer[] |
|
capAdd |
Add Linux capabilities |
|
type |
string[] |
|
capDrop |
Drop Linux capabilities |
|
type |
string[] |
|
cgroupParent |
Optional parent cgroup for the container |
|
type |
string |
|
cgroupns |
Cgroup namespace to use. host runs the container in the Docker host’s cgroup namespace, private runs the container in its own private cgroup namespace. By default, DOcker uses the cgroup namespace as configured by the default-cgroupns-mode option on the daemon |
|
type |
string |
|
enum |
host, private |
|
cidfile |
Write the container ID to the file |
|
type |
string |
|
command |
Command to run when deploying the container |
|
type |
string[] |
|
cpuPeriod |
Limit CPU CFS (Completely Fair Scheduler) period |
|
type |
integer |
|
cpuQuota |
Limit CPU CFS (Completely Fair Scheduler) quota |
|
type |
integer |
|
cpuRTPeriod |
Limit CPU real-time period in microseconds |
|
type |
integer |
|
cpuRTRuntime |
Limit CPU real-time runtime in microseconds |
|
type |
integer |
|
cpuShares |
CPU shares (relative weight) |
|
type |
integer |
|
cpus |
Number of CPUs |
|
type |
number |
|
cpusetCpus |
CPUs in which to allow execution (0-3, 0,1) |
|
type |
string |
|
cpusetMems |
MEMs in which to allow execution (0-3, 0,1) |
|
type |
string |
|
detachKeys |
Overrude the key sequence for detaching a container |
|
type |
string |
|
device |
Add a host device to the container |
|
type |
string[] |
|
deviceCgroupRule |
Add a rule to the cgroup allowed devices list |
|
type |
string[] |
|
deviceReadBps |
Limit read rate (bytes per second) from a device |
|
type |
string[] |
|
deviceReadIops |
Limit read rate (IO per second) from a device |
|
type |
string[] |
|
deviceWriteBps |
Limit write rate (bytes per second) from a device |
|
type |
string[] |
|
deviceWriteIops |
Limit write rate (IO per second) from a device |
|
type |
string[] |
|
disableContentTrust |
Skip image verification |
|
type |
boolean |
|
default |
True |
|
dns |
Set custom DNS servers |
|
type |
string[] |
|
dnsOption |
Set DNS options |
|
type |
string[] |
|
dnsSearch |
Set custom DNS search domains |
|
type |
string[] |
|
domainname |
Container NIS domain name |
|
type |
string |
|
entrypoint |
Overwrite the default ENTRYPOINT of the image |
|
type |
string |
|
env |
Set environment variables |
|
type |
string[] |
|
envFile |
Read in a file of environment variables |
|
type |
string[] |
|
expose |
Expose a port or a range of ports |
|
type |
integer[] |
|
gpus |
GPU devices to add to the container (‘all’ to pass all GPUs) |
|
type |
string |
|
groupAdd |
Add additional groups to join |
|
type |
string[] |
|
healthCmd |
Command to run to check health |
|
type |
string |
|
healthInterval |
Time between running the check (ms|s|m|h) |
|
type |
string |
|
default |
0s |
|
healthRetries |
Consecutive failures needed to report unhealthy |
|
type |
integer |
|
healthStartPeriod |
Start period for the container to initialize before starting health-retries countdown (ms|s|m|h) |
|
type |
string |
|
default |
0s |
|
healthTimeout |
Maximum time to allow one check to run (ms|s|m|h) |
|
type |
string |
|
default |
0s |
|
hostname |
Container host name |
|
type |
string |
|
init |
Run an init inside the container that forwards signals and reaps processes |
|
type |
boolean |
|
default |
True |
|
ip |
IPv4 address |
|
type |
string |
|
ip6 |
IPv6 address |
|
type |
string |
|
ipc |
IPC mode to use |
|
type |
string |
|
isolation |
Container isolation technology |
|
type |
string |
|
kernelMemory |
Kernel memory limit (bytes) |
|
type |
integer |
|
label |
Set metadata on a container |
|
type |
string[] |
|
labelFile |
Read in a line delimited file of labels |
|
type |
string[] |
|
link |
Add link to another container |
|
type |
string[] |
|
linkLocalIP |
Contaiener IPv4/IPv6 link-local addresses |
|
type |
string[] |
|
logDriver |
Logging driver for the container |
|
type |
string |
|
default |
none |
|
logOpt |
Log driver options |
|
type |
string[] |
|
macAddress |
Container MAC address |
|
type |
string |
|
memory |
Memory limit (bytes) |
|
type |
integer |
|
memoryReservation |
Memory soft limit |
|
type |
integer |
|
memorySwap |
Swap limit equal to memory plus swap (-1 to enable unlimited swap) |
|
type |
integer |
|
memorySwappiness |
Tune container memory swappiness (0 to 100) |
|
type |
integer |
|
default |
-1 |
|
mount |
Attach a filesystem mount to the container |
|
type |
string[] |
|
network |
Connect a container to a network |
|
type |
string[] |
|
networkAlias |
Attach a network-scoped alias for the container |
|
type |
string[] |
|
noHealthcheck |
Disable any container-specified HEALTHCHECK |
|
type |
boolean |
|
oomKillDisable |
Disable OOM Killer |
|
type |
boolean |
|
oomScoreAdj |
Tune host’s OOM preferences (-1000 to 1000) |
|
type |
integer |
|
pid |
PID namespace to use |
|
type |
string |
|
pidsLimit |
Tune container pids limit (-1 for unlimited |
|
type |
integer |
|
privileged |
Give extended privileges to this container |
|
type |
boolean |
|
publish |
Publish container ports to the host |
|
type |
string[] |
|
publishAll |
Publish all exposed ports to random ports |
|
type |
boolean |
|
readOnly |
Mount the container’s root filesystem as read only |
|
type |
boolean |
|
locationsCacheTTL |
Available locations cache TTL (in seconds). When such cache expires, the connector performs a new request to check locations availability |
|
type |
integer |
|
default |
10 |
|
restart |
Restart policy to apply when a container exists |
|
type |
string |
|
default |
no |
|
rm |
Automatically remove the container when it exits |
|
type |
boolean |
|
default |
True |
|
runtime |
Runtime to use for this container |
|
type |
string |
|
securityOpt |
Security options |
|
type |
string[] |
|
shmSize |
Size of /dev/shm |
|
type |
integer |
|
sigProxy |
Proxy received signals to the process |
|
type |
boolean |
|
default |
True |
|
stopSignal |
Signal to stop a container |
|
type |
string |
|
default |
SIGTERM |
|
stopTimeout |
Timeout (in seconds) to stop a container |
|
type |
integer |
|
storageOpt |
Storage driver options for the container |
|
type |
string[] |
|
sysctl |
Sysctl options |
|
type |
string[] |
|
tmpfs |
Mount a tmpfs directory |
|
type |
string[] |
|
transferBufferSize |
Buffer size allocated for local and remote data transfers |
|
type |
integer |
|
default |
64kiB |
|
ulimit |
Ulimit options |
|
type |
string[] |
|
user |
Username or UID (format: <name|uid>[:<group|gid>]) |
|
type |
string |
|
userns |
User namespace to use |
|
type |
string |
|
uts |
UTS namespace to use |
|
type |
string |
|
volume |
Bind mount a volume |
|
type |
string[] |
|
volumeDriver |
Optional volume driver for the container |
|
type |
string |
|
volumesFrom |
Mount volumes from the specified containers |
|
type |
string[] |
|
workdir |
Working directory inside the container |
|
type |
string |
|